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To explore the methylation pattern, its role in transcriptional regulation and potential modifiers of methylation of the TLR9 gene in chronic periapical inflammation. This cross-sectional study included apical lesions of endodontic origin (ALEO, n = 61) and healthy periodontal ligaments (HPL, n = 15). Demethylations of TLR9 promoter CpG sites, along with the intragenic DNA methylation status, were involved in higher transcription in ALEO. Hence, chronic periapical inflammation and ageing modify the methylation status in the gene promoter and intragenic CpG islands.
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