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The study aims to examine the impact of the fetal fraction on the screen‐positive rate in screening for microdeletion 22q11.2. The overall screen‐positive rate was 0.59%. In the low-risk group, the fetal fraction was 10.1%, and in the high-risk group, it was 7.3%. Regression analysis indicated a strong correlation between the fetal fraction (FF) and the screen‐positive rate. In the cases with a FF of less than 11.0%, the screen‐positive rate was 0.92%, while it was 0.13% in the group with a higher FF. The study findings demonstrate that the screen‐positive rate depends on the fetal fraction. In order to keep the rate low, we recommend restricting the analysis to samples with a fetal fraction of 11% and more.
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